3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00118

Details:

PFam ID : PF00118

PFam Domain Description : TCP-1/cpn60 chaperonin family

Number of Sequence in 50% Dataset : 346

Number of Sequence in Full Dataset : 4461

Average sequence length: 342.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00118	F1M2X5_RAT_1_176	54.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00118	E9GRI8_DAPPU_1_59	99.4

Sequence based PCA Plot of the family - PF00118 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=61 Length=11
Motif2 Start=145 Length=11
Motif3 Start=37 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay