3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00117

Details:

PFam ID : PF00117

PFam Domain Description : Glutamine amidotransferase class-I

Number of Sequence in 50% Dataset : 437

Number of Sequence in Full Dataset : 8610

Average sequence length: 187.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00117	E6YSZ2_9RHIZ_9_71	91.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00117	C6F5I3_9NEOP_1_113	99.6

Sequence based PCA Plot of the family - PF00117 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=128 Length=8
Motif4 Start=99 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay