3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00116

Details:

PFam ID : PF00116

PFam Domain Description : Cytochrome C oxidase subunit II, periplasmic domain

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 4657

Average sequence length: 102.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00116	B6A3V4_RHILW_58_159	81.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00116	D6PCW9_9BACT_92_171	99.2

Sequence based PCA Plot of the family - PF00116 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=37 Length=23
Motif3 Start=84 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay