3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00115 Details: PFam ID : PF00115 PFam Domain Description : Cytochrome C and Quinol oxidase polypeptide I Number of Sequence in 50% Dataset : 169 Number of Sequence in Full Dataset : 12764 Average sequence length: 233.2 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF00115F2XUT1_9NEOP_1_18294.6 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF00115Q5LVS3_SILPO_1_17599.8 Sequence based PCA Plot of the family - PF00115 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=86 Length=8Motif2 Start=16 Length=8Motif3 Start=39 Length=8Motif4 Start=1 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF00115
PFam Domain Description : Cytochrome C and Quinol oxidase polypeptide I
Number of Sequence in 50% Dataset : 169
Number of Sequence in Full Dataset : 12764
Average sequence length: 233.2
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER