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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00115
Details:

PFam ID : PF00115

PFam Domain Description : Cytochrome C and Quinol oxidase polypeptide I

Number of Sequence in 50% Dataset : 169

Number of Sequence in Full Dataset : 12764

Average sequence length: 233.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF00115F2XUT1_9NEOP_1_18294.6
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF00115Q5LVS3_SILPO_1_17599.8
Sequence based PCA Plot of the family - PF00115 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=86 Length=8
Motif2 Start=16 Length=8
Motif3 Start=39 Length=8
Motif4 Start=1 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay