3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00113

Details:

PFam ID : PF00113

PFam Domain Description : Enolase, C-terminal TIM barrel domain

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 1476

Average sequence length: 262.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00113	D0NSS0_PHYIT_453_569	16.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00113	D8LBH0_ECTSI_178_369	99.7

Sequence based PCA Plot of the family - PF00113 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=8
Motif3 Start=29 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay