3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00111

Details:

PFam ID : PF00111

PFam Domain Description : 2Fe-2S iron-sulfur cluster binding domain

Number of Sequence in 50% Dataset : 287

Number of Sequence in Full Dataset : 6341

Average sequence length: 75.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00111	F0Y271_9STRA_41_173	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00111	Q18HS8_HALWD_4_139	97.4

Sequence based PCA Plot of the family - PF00111 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=2 Length=17
Motif3 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay