3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00109

Details:

PFam ID : PF00109

PFam Domain Description : Beta-ketoacyl synthase, N-terminal domain

Number of Sequence in 50% Dataset : 827

Number of Sequence in Full Dataset : 9861

Average sequence length: 221.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00109	A0R3V4_MYCS2_78_132	75.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00109	E2LDF4_MONPE_280_318	99.9

Sequence based PCA Plot of the family - PF00109 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=129 Length=8
Motif3 Start=19 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay