3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00108

Details:

PFam ID : PF00108

PFam Domain Description : Thiolase, N-terminal domain

Number of Sequence in 50% Dataset : 222

Number of Sequence in Full Dataset : 4296

Average sequence length: 240.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00108	D7E2S7_NOSA0_1_114	77.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00108	Q1M689_RHIL3_57_130	100

Sequence based PCA Plot of the family - PF00108 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=42 Length=8
Motif3 Start=65 Length=11
Motif4 Start=92 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay