3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00107

Details:

PFam ID : PF00107

PFam Domain Description : Zinc-binding dehydrogenase

Number of Sequence in 50% Dataset : 1391

Number of Sequence in Full Dataset : 12932

Average sequence length: 125.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00107	D2VC93_NAEGR_172_300	77.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00107	Q2P5U7_XANOM_167_227	99.8

Sequence based PCA Plot of the family - PF00107 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=2 Length=8
Motif4 Start=130 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay