3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00105

Details:

PFam ID : PF00105

PFam Domain Description : Zinc finger, C4 type (two domains)

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 1273

Average sequence length: 63.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00105	A8WPK7_CAEBR_5_85	98.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00105	A8WPK7_CAEBR_5_85	99.0

Sequence based PCA Plot of the family - PF00105 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=22 Length=8
Motif3 Start=1 Length=8
Motif4 Start=66 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay