3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00104

Details:

PFam ID : PF00104

PFam Domain Description : Ligand-binding domain of nuclear hormone receptor

Number of Sequence in 50% Dataset : 514

Number of Sequence in Full Dataset : 2187

Average sequence length: 186.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00104	A1YGC7_PANPA_3_49	86.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00104	E3LJG1_CAERE_74_343	99.3

Sequence based PCA Plot of the family - PF00104 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=174 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay