3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00100

Details:

PFam ID : PF00100

PFam Domain Description : Zona pellucida-like domain

Number of Sequence in 50% Dataset : 415

Number of Sequence in Full Dataset : 1026

Average sequence length: 219.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00100	A9JRE5_DANRE_590_762	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00100	E4Y3X5_OIKDI_95_293	95.9

Sequence based PCA Plot of the family - PF00100 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=27 Length=8
Motif3 Start=39 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay