3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00098

Details:

PFam ID : PF00098

PFam Domain Description : Zinc knuckle

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 3925

Average sequence length: 17.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00098	E2BK62_9HYME_76_93	86.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00098	A7S9R4_NEMVE_157_171	82

Sequence based PCA Plot of the family - PF00098 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay