3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00095

Details:

PFam ID : PF00095

PFam Domain Description : WAP-type (Whey Acidic Protein) 'four-disulfide core'

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 542

Average sequence length: 44.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00095	C7C1I9_PIG_1_27	60.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00095	C7C1I9_PIG_1_27	92.4

Sequence based PCA Plot of the family - PF00095 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay