3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00094

Details:

PFam ID : PF00094

PFam Domain Description : von Willebrand factor type D domain

Number of Sequence in 50% Dataset : 420

Number of Sequence in Full Dataset : 1094

Average sequence length: 143.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00094	D2HFT8_AILME_309_332	88.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00094	Q0GGQ1_GAMHO_96_170	99.1

Sequence based PCA Plot of the family - PF00094 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=65 Length=8
Motif2 Start=101 Length=8
Motif3 Start=90 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay