3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00093

Details:

PFam ID : PF00093

PFam Domain Description : von Willebrand factor type C domain

Number of Sequence in 50% Dataset : 125

Number of Sequence in Full Dataset : 670

Average sequence length: 59.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00093	E5SH06_TRISP_518_602	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00093	Q4THF9_TETNG_40_77	95.8

Sequence based PCA Plot of the family - PF00093 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=23
Motif2 Start=1 Length=8
Motif3 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay