3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00092

Details:

PFam ID : PF00092

PFam Domain Description : von Willebrand factor type A domain

Number of Sequence in 50% Dataset : 900

Number of Sequence in Full Dataset : 2505

Average sequence length: 164.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00092	B7RZY0_9GAMM_1244_1366	89.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00092	A7BNL3_9GAMM_7_125	99.8

Sequence based PCA Plot of the family - PF00092 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=148 Length=8
Motif3 Start=118 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay