3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00091

Details:

PFam ID : PF00091

PFam Domain Description : Tubulin/FtsZ family, GTPase domain

Number of Sequence in 50% Dataset : 201

Number of Sequence in Full Dataset : 2330

Average sequence length: 168.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00091	A0B694_METTP_115_252	73

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00091	B0R9A1_HALS3_47_183	99.6

Sequence based PCA Plot of the family - PF00091 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=86 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay