3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00090

Details:

PFam ID : PF00090

PFam Domain Description : Thrombospondin type 1 domain

Number of Sequence in 50% Dataset : 396

Number of Sequence in Full Dataset : 4107

Average sequence length: 50.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00090	A1A5B7_MOUSE_805_845	98.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00090	E0VCJ0_PEDHC_569_646	99.1

Sequence based PCA Plot of the family - PF00090 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=1 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay