3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00089

Details:

PFam ID : PF00089

PFam Domain Description : Trypsin

Number of Sequence in 50% Dataset : 2816

Number of Sequence in Full Dataset : 8863

Average sequence length: 203.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00089	E9IVH9_SOLIN_1_92	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00089	B5GZ73_STRCL_195_290	98.9

Sequence based PCA Plot of the family - PF00089 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=54 Length=14
Motif3 Start=36 Length=8
Motif4 Start=22 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay