3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00088

Details:

PFam ID : PF00088

PFam Domain Description : Trefoil (P-type) domain

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 280

Average sequence length: 43.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00088	B3RWC2_TRIAD_69_114	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00088	A9V7W8_MONBE_22_83	100

Sequence based PCA Plot of the family - PF00088 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=11 Length=8
Motif2 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay