3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00086

Details:

PFam ID : PF00086

PFam Domain Description : Thyroglobulin type-1 repeat

Number of Sequence in 50% Dataset : 108

Number of Sequence in Full Dataset : 607

Average sequence length: 66.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00086	A7RFR2_NEMVE_100_174	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00086	Q5IF03_HORSE_45_87	100

Sequence based PCA Plot of the family - PF00086 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=34 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay