3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00085

Details:

PFam ID : PF00085

PFam Domain Description : Thioredoxin

Number of Sequence in 50% Dataset : 1371

Number of Sequence in Full Dataset : 8413

Average sequence length: 101.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00085	A7RNN7_NEMVE_477_561	97.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00085	C6XNQ8_HIRBI_16_87	100

Sequence based PCA Plot of the family - PF00085 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=52 Length=8
Motif3 Start=23 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay