3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00081

Details:

PFam ID : PF00081

PFam Domain Description : Iron/manganese superoxide dismutases, alpha-hairpin domain

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 1564

Average sequence length: 79.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00081	A3XNP8_LEEBM_43_124	60.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00081	D8TJQ9_VOLCA_56_152	100

Sequence based PCA Plot of the family - PF00081 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=8
Motif2 Start=1 Length=18
Motif3 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay