3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00080

Details:

PFam ID : PF00080

PFam Domain Description : Copper/zinc superoxide dismutase (SODC)

Number of Sequence in 50% Dataset : 144

Number of Sequence in Full Dataset : 1287

Average sequence length: 141.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00080	Q7NJ51_GLOVI_52_219	76.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00080	E9PK03_HUMAN_84_224	99.9

Sequence based PCA Plot of the family - PF00080 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=17 Length=8
Motif3 Start=85 Length=8
Motif4 Start=75 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay