3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00073

Details:

PFam ID : PF00073

PFam Domain Description : picornavirus capsid protein

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 2539

Average sequence length: 145.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00073	Q7T6T6_9VIRU_423_551	83.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00073	O91464_AIV_834_956	86

Sequence based PCA Plot of the family - PF00073 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=18
Motif2 Start=59 Length=8
Motif3 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay