3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00066

Details:

PFam ID : PF00066

PFam Domain Description : LNR domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 330

Average sequence length: 37.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00066	Q6PNG4_9INFA_1_26	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00066	C4QQ11_SCHMA_309_359	99.3

Sequence based PCA Plot of the family - PF00066 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay