3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00063

Details:

PFam ID : PF00063

PFam Domain Description : Myosin head (motor domain)

Number of Sequence in 50% Dataset : 564

Number of Sequence in Full Dataset : 1909

Average sequence length: 452.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00063	A0BGZ1_PARTE_168_548	66.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00063	F1SSA5_PIG_1_61	99.7

Sequence based PCA Plot of the family - PF00063 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=8
Motif4 Start=85 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay