3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00062

Details:

PFam ID : PF00062

PFam Domain Description : C-type lysozyme/alpha-lactalbumin family

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 325

Average sequence length: 112.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00062	B4IRR1_DROPE_1_57	86.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00062	Q7M3E3_PSEPE_1_35	99.6

Sequence based PCA Plot of the family - PF00062 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=70 Length=8
Motif3 Start=23 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay