3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00061

Details:

PFam ID : PF00061

PFam Domain Description : Lipocalin / cytosolic fatty-acid binding protein family

Number of Sequence in 50% Dataset : 153

Number of Sequence in Full Dataset : 712

Average sequence length: 126.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00061	C3YTN1_BRAFL_109_264	83.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00061	D2I3Y0_AILME_103_180	53

Sequence based PCA Plot of the family - PF00061 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=16 Length=8
Motif3 Start=1 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay