3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00059

Details:

PFam ID : PF00059

PFam Domain Description : Lectin C-type domain

Number of Sequence in 50% Dataset : 1320

Number of Sequence in Full Dataset : 4027

Average sequence length: 106.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00059	E4Z2C9_OIKDI_34_179	99.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00059	C3ZIK0_BRAFL_490_529	99.9

Sequence based PCA Plot of the family - PF00059 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=63 Length=17
Motif2 Start=23 Length=8
Motif3 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay