3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00058

Details:

PFam ID : PF00058

PFam Domain Description : Low-density lipoprotein receptor repeat class B

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 1394

Average sequence length: 41.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00058	B3RKE8_TRIAD_672_712	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00058	E0VAH7_PEDHC_1537_1577	99.4

Sequence based PCA Plot of the family - PF00058 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay