3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00057

Details:

PFam ID : PF00057

PFam Domain Description : Low-density lipoprotein receptor domain class A

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 4980

Average sequence length: 38.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00057	Q86DP7_9CAEN_1_57	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00057	C3ZPL9_BRAFL_1112_1157	99.9

Sequence based PCA Plot of the family - PF00057 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=10 Length=11
Motif3 Start=1 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay