3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00056

Details:

PFam ID : PF00056

PFam Domain Description : lactate/malate dehydrogenase, NAD binding domain

Number of Sequence in 50% Dataset : 108

Number of Sequence in Full Dataset : 1793

Average sequence length: 138.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00056	Q86DP7_9CAEN_1_57	66.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00056	E0VKC2_PEDHC_137_290	99.6

Sequence based PCA Plot of the family - PF00056 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=26 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay