3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00054

Details:

PFam ID : PF00054

PFam Domain Description : Laminin G domain

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 284

Average sequence length: 126.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00054	B4GU02_DROPE_2253_2330	84.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00054	E9G3G9_DAPPU_1872_2022	100

Sequence based PCA Plot of the family - PF00054 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=181 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay