3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00053

Details:

PFam ID : PF00053

PFam Domain Description : Laminin EGF-like (Domains III and V)

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 3843

Average sequence length: 49.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00053	C3YQW5_BRAFL_551_644	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00053	B3NUZ3_DROER_35_125	94.9

Sequence based PCA Plot of the family - PF00053 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=11 Length=8
Motif2 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay