3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00052

Details:

PFam ID : PF00052

PFam Domain Description : Laminin B (Domain IV)

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 253

Average sequence length: 131.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00052	C3ZCS7_BRAFL_1429_1561	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00052	E9G3G9_DAPPU_296_447	100

Sequence based PCA Plot of the family - PF00052 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=92 Length=8
Motif3 Start=82 Length=8
Motif4 Start=3 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay