3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00050

Details:

PFam ID : PF00050

PFam Domain Description : Kazal-type serine protease inhibitor domain

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 631

Average sequence length: 51.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00050	A1X1V8_CARRO_19_66	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00050	B0I3D8_CARAU_60_136	100

Sequence based PCA Plot of the family - PF00050 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=37 Length=8
Motif2 Start=1 Length=11
Motif3 Start=28 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay