3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00049

Details:

PFam ID : PF00049

PFam Domain Description : Insulin/IGF/Relaxin family

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 430

Average sequence length: 77.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00049	B4MJ58_DROWI_19_93	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00049	Q0P4T1_XENTR_37_199	100

Sequence based PCA Plot of the family - PF00049 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay