3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00046

Details:

PFam ID : PF00046

PFam Domain Description : Homeobox domain

Number of Sequence in 50% Dataset : 243

Number of Sequence in Full Dataset : 3292

Average sequence length: 52.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00046	A8DWB8_NEMVE_1_41	92.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00046	A1A5I2_DANRE_725_770	99.1

Sequence based PCA Plot of the family - PF00046 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay