3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00045

Details:

PFam ID : PF00045

PFam Domain Description : Hemopexin

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 1097

Average sequence length: 44.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00045	F1P0N3_CHICK_414_458	95.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00045	Q8JKP2_9VIRU_665_710	98.0

Sequence based PCA Plot of the family - PF00045 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay