3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00044

Details:

PFam ID : PF00044

PFam Domain Description : Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 2694

Average sequence length: 140.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00044	A4AAA1_9GAMM_1_142	76.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00044	F2E5W5_HORVD_66_102	99.9

Sequence based PCA Plot of the family - PF00044 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=160 Length=11
Motif2 Start=132 Length=14
Motif3 Start=44 Length=11
Motif4 Start=3 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay