3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00043

Details:

PFam ID : PF00043

PFam Domain Description : Glutathione S-transferase, C-terminal domain

Number of Sequence in 50% Dataset : 975

Number of Sequence in Full Dataset : 5654

Average sequence length: 97.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00043	D6PE81_9BACT_3_58	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00043	B8YE15_9BIVA_5_62	99.9

Sequence based PCA Plot of the family - PF00043 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=28 Length=8
Motif4 Start=40 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay