3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00041

Details:

PFam ID : PF00041

PFam Domain Description : Fibronectin type III-like domain

Number of Sequence in 50% Dataset : 3193

Number of Sequence in Full Dataset : 11224

Average sequence length: 83.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00041	C5L2F8_9ALVE_5227_5347	97.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00041	C3Z0A1_BRAFL_241_311	99.8

Sequence based PCA Plot of the family - PF00041 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=31 Length=8
Motif3 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay