3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00040

Details:

PFam ID : PF00040

PFam Domain Description : Fibronectin type III domain

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 302

Average sequence length: 40.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00040	C3ZG05_BRAFL_507_545	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00040	C3ZG05_BRAFL_507_545	100

Sequence based PCA Plot of the family - PF00040 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=17
Motif2 Start=24 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay