3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00039

Details:

PFam ID : PF00039

PFam Domain Description : Fibronectin type II domain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 129

Average sequence length: 37.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00039	O02816_RABIT_324_351	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00039	Q28693_RABIT_1_21	85

Sequence based PCA Plot of the family - PF00039 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay