3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00038

Details:

PFam ID : PF00038

PFam Domain Description : Intermediate filament head (DNA binding) region

Number of Sequence in 50% Dataset : 155

Number of Sequence in Full Dataset : 774

Average sequence length: 259.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00038	C3ZD18_BRAFL_370_667	79.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00038	Q4T8N9_TETNG_10_376	100

Sequence based PCA Plot of the family - PF00038 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay