3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00035

Details:

PFam ID : PF00035

PFam Domain Description : Double-stranded RNA binding motif

Number of Sequence in 50% Dataset : 331

Number of Sequence in Full Dataset : 2319

Average sequence length: 65.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00035	D8M9C3_BLAHO_243_319	72.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00035	E4XR68_OIKDI_999_1075	99.9

Sequence based PCA Plot of the family - PF00035 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=24 Length=8
Motif3 Start=49 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay