3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00033

Details:

PFam ID : PF00033

PFam Domain Description : Cytochrome b(N-terminal)/b6/petB

Number of Sequence in 50% Dataset : 438

Number of Sequence in Full Dataset : 2180

Average sequence length: 163.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00033	A5VEG9_SPHWW_22_275	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00033	C9Y702_9BURK_2_80	90.9

Sequence based PCA Plot of the family - PF00033 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=42 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay