3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00032

Details:

PFam ID : PF00032

PFam Domain Description : Cytochrome b(C-terminal)/b6/petD

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 3192

Average sequence length: 89.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00032	A5HU14_LEIAM_221_290	86.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00032	E3P8N4_PARHE_1_99	98.3

Sequence based PCA Plot of the family - PF00032 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=18
Motif2 Start=88 Length=8
Motif3 Start=8 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay